Sonication based 4C-Seq

w4CSeq applies a customized pipeline to deal with sonication fragmentation based 4C-Seq data, identifies statistically significant regions, draws interacting plots for intra-chromosome and inter-chromosome interactions, and overlays genomic features (TSS, TTS, CpG sites), DNA replication timing and user-provided annotation onto it. The combined plot will help uncover significant features in/around 4C regions.

Basic Information

Specify a bait region

Parameters for statistical analysis

Optional: You can upload bed files for association analysis

Click to upload

Click to add input

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